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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs150580510 chr5:167756489 T/TA 8.41E-7 401 15.93 14.53 16.82 KM Plot
LGG rs150604872 chr1:169619291 T/TG 2.68E-11 402 15.17 17.93 5.93 KM Plot
LGG rs150605606 chr2:17846006 TG/T 1.44E-8 406 15.3 15.67 7.33 KM Plot
LGG rs150626408 chr7:56060126 TCAG/T 1.58E-10 406 15.32 15.93 7.8 KM Plot
LGG rs150693706 chr7:64932595 T/G 9.18E-8 400 15.57 15.2 2.27 KM Plot
LGG rs150886222 chr2:114458844 A/AAAC 0 404 15.37 14.53 0.23 KM Plot
LGG rs150902738 chr10:71867963 CA/C 0.000104 405 15.65 13.7 8.78 KM Plot
LGG rs150990289 chr7:56048681 T/TA 1.58E-10 406 15.32 15.93 7.8 KM Plot
LGG rs151054009 chr7:6703822 C/G 3.88E-7 401 15.2 17.25 4.82 KM Plot
LGG rs151114314 chr20:62163744 C/CTG 1.97E-6 399 15.35 16.47 12.92 KM Plot
LGG rs1513431 chr3:168564812 A/C 2.71E-5 401 15.6 12.9 4.1 KM Plot
LGG rs1536688 chr9:16129553 A/G 5.73E-5 407 15.32 14.43 0 KM Plot
LGG rs1542155 chr1:236515385 C/G 0.000127 406 15.37 16.28 4 KM Plot
LGG rs1542453 chr15:31899862 C/T 0.000161 407 15.17 15.45 13.58 KM Plot
LGG rs1548062 chr13:43700866 A/G 0.000225 407 11.7 15.27 15.6 KM Plot